testMultiplePairwise

Multiple Comparison Statistical Test (Friedman + Pairwise Shaffer PostHoc)

Usage

testMultiplePairwise(e, output, rankOrder = "max", alpha = 0.05)

Arguments

e
Input experiment
output
The output for which the tet will be performed.
rankOrder
The optimization strategy, can be either maximizing "max" or minimizing "min" the target output variable.
alpha
The significance level used for the whole testing procedure.

Value

an testMultiplePairwise object

Description

This function perfoms a multiple comparison statistical test for the given experiment. First of all it performs a Friedman Test over all methods. In the case this test is rejected, meaning that significant differences are present among the methods a post-hoc test is then executed. For that, each pair of methods are compared between each other, and finally a Shaffer familywise error correction is applied to the resulting p-values.

Examples

# First we create an experiment from the wekaExperiment problem and prepare # it to apply the test: experiment <- expCreate(wekaExperiment, name="test", parameter="fold") experiment <- expReduce(experiment, "fold", mean) experiment <- expSubset(experiment, list(featureSelection = "yes")) experiment <- expInstantiate(experiment, removeUnary=TRUE) # Then we perform a testMultiplePairwise test procedure test <- testMultiplePairwise(experiment, "accuracy", "max") summary(test)
--------------------------------------------------------------------- Friedman test, objetive maximize output variable accuracy. Obtained p-value: 3.3072e-04 Chi squared with 3 degrees of freedom statistic: 18.6000 Test rejected: p-value: 3.3072e-04 < 0.0500 --------------------------------------------------------------------- Pairwise post hoc test for output accuracy Adjust method: Shaffer p-values: J48 NaiveBayes OneR RandomForest 0.4061836 0.06483817 0.0002465873 J48 NA 0.40618358 0.0148973333 NaiveBayes NA NA 0.2690580653 ---------------------------------------------------------------------

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